Category: Publications

Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study

BMC Microbiology. 2015, Vol. 15, No. Suppl 1, pp. S3 [full text] Bacteriophages affect evolution of bacterial communities in spatially distributed habitats: a simulation study Klimenko A.I., Matushkin Yu.G., Kolchanov N.A., Lashin S.A. Department of Systems Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia; Novosibirsk State University, Novosibirsk, Russia, e-mail: klimenko[_at_]bionet.nsc.ru Abstract Background […]

A Review of Simulation and Modeling Approaches in Microbiology

Russian Journal of Genetics: Applied Research. 2016, Vol. 6, No. 8, pp. 845–853 [full text] A Review of Simulation and Modeling Approaches in Microbiology Klimenko A.I., Matushkin Yu.G., Kolchanov N.A., Lashin S.A. Department of Systems Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia; Novosibirsk State University, Novosibirsk, Russia, e-mail: klimenko[_at_]bionet.nsc.ru Abstract Bacterial communities […]

Modeling evolution of spatially distributed bacterial communities: a simulation with the Haploid Evolutionary Constructor

BMC Evolutionary Biology. 2015, Vol. 15, No. Suppl 1, pp. S3 [full text] Modeling evolution of spatially distributed bacterial communities: a simulation with the Haploid Evolutionary Constructor Klimenko A.I., Matushkin Yu.G., Kolchanov N.A., Lashin S.A. Department of Systems Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia; Novosibirsk State University, Novosibirsk, Russia, e-mail: klimenko[_at_]bionet.nsc.ru […]

HEC 2.0: improved simulation of the evolution of prokaryotic communities

Mathematical Biology and Bioinformatics. 2014, Vol. 9, No. 2, pp. 585-596 [full text] HEC 2.0: improved simulation of the evolution of prokaryotic communities Lashin S.A., Klimenko A.I., Mustafin Z.S., Kolchanov N.A., Matushkin Yu.G. Department of Systems Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia; Faculty of Natural Science, Novosibirsk State University, Novosibirsk, Russia, […]

Spatially distributed modeling of a bacterial community with haploid evolutionary constructor

Rus. J Genet.: Ap. Res. 2013; Vol. 3, No. 3, pp. 184–190. [full text] Spatially distributed modeling of prokaryotic community evolution Lashin S.A., Mamontova E.A., Matushkin Yu.G. Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, Russia Novosibirsk State University, Novosibirsk, Russia e-mail: lashin[_at_]bionet.nsc.ru Abstract This paper describes the development of an […]

Evolution, Biodiversity and Ecology in Microbial Communities: Mathematical Modeling and Simulation with the “Haploid Evolutionary Constructor” Software Tool

Sergey A. Lashin, Yury G. Matushkin, Alexandra I. Klimenko, Valentin V. Suslov and Nikolay A. Kolchanov (2014). Evolution, Biodiversity and Ecology in Microbial Communities: Mathematical Modeling and Simulation with the “Haploid Evolutionary Constructor” Software Tool, Biodiversity – The Dynamic Balance of the Planet, PhD. Oscar Grillo (Ed.), ISBN: 978-953-51-1315-7, InTech, DOI: 10.5772/58302. Available from: Evolution, […]

Theories of Biological Evolution from the Viewpoint of the Modern Systemic Biology

Russian Journal of Genetics. 2012; V.48. N. 5. P. 481-496 [full text] Theories of biological evolution from the viewpoint of the modern systemic biology Lashin S.A., Suslov V.V., Matushkin Yu.G. Department of Systems Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia; Novosibirsk State University, Novosibirsk, Russia, e-mail: lashin[_at_]bionet.nsc.ru Abstract Theories of biological evolution […]

Haploid evolutionary constructor: new features and further challenges

In Silico Biology. 2011/2012; V.11. N. 3. P. 125-135 [full text] Haploid evolutionary constructor: new features and further challenges Lashin S.A., Matushkin Yu.G. Department of Systems Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia; Novosibirsk State University, Novosibirsk, Russia, e-mail: lashin[_at_]bionet.nsc.ru Abstract In this paper we consider the recent advances in methodology for […]

Computer modeling of genome complexity variation trends in prokaryotic communities under varying habitat conditions

Ecological modelling. 2012; 224(1): 124-129 [full text] Computer modeling of genome complexity variation trends in prokaryotic communities under varying habitat conditions Lashin S.A., Matushkin Yu.G., Suslov V.V., Kolchanov N.A. Department of Systems Biology, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia; Novosibirsk State University, Novosibirsk, Russia, e-mail: lashin[_at_]bionet.nsc.ru Abstract There are two types of […]

Evolutionary Trends in the Prokaryotic Community and Prokaryotic Community–Phage Systems

Russian Journal of Genetics. 2011; 47(12): 1487-1495 [full text] Evolutionary Trends in the Prokaryotic Community and Prokaryotic Community–Phage Systems Lashin S.A., Matushkin Yu.G., Suslov V.V., Kolchanov N.A. Institute of Cytology and Genetics, Siberian Branch, Russian Academy of Sciences, Novosibirsk, 630090 Russia Novosibirsk State University, Novosibirsk, 630090 Russia e-mail: lashin[_at_]bionet.nsc.ru Abstract The Evolutionary Constructor software has […]

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